Johnson BK, Scholz MB, Teal TK, Abramovitch RB: SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis. BMC Bioinformatics 2016, 17(1):1-4.
We would like to thank the members of the Abramovitch Lab for helpful discussions and critical assessment/bug identification within the workflow. We would also like to thank the developers and contributors of Python, Trimmomatic, FastQC, Bowtie, HTSeq, and edgeR; without these individuals, SPARTA would not be possible. Finally, we would like to thank you, the user, for utilizing the workflow and making it better.